codingstyle: replace "not ... is ..." with "... is not ..."

Reported by flake8.

model: remove BaseModel class

The only remaining purpose of this class was to provide the "sa" field,
allowing a custom SQLAlchemy session to be used for model operations.
However, this never actually worked, nor was it used anywhere.

There's always a global SQLAlchemy session associated with the current
thread; using another session for a single function call does not make
any sense (as sessions cannot be mixed), unless the code works carefully
to ensure the two sessions (and all objects loaded from them) are kept
completely separate. Suffice to say that Kallithea does no such thing,
thus there's no need to pretend to support multiple concurrent sessions.

model: move code from __init__.py to base.py

Having too much code, in particular too much imports, inside a package's
__init__.py is a recipe for circular imports, and considered bad practice in
Python [1]

Move out everything from kallithea/model/__init__.py to a new file
kallithea/model/base.py and adapt the existing imports.

[1] http://docs.python-guide.org/en/latest/writing/structure/#packages

model: drop BaseModel.cls

It no longer serves a purpose.

cleanup: make module self-naming consistent

The self naming is quite pointless ... but at least make it right.

Second step in two-part process to rename directories.
This is the actual directory rename.